MIRA installation script

I made a small script to install the MIRA software. It checks if yorick is installed, also optimpack and downloads them and installs them if they are missing.

You can downlad it here

#! /bin/bash
#******************************************************************************
# Install script for MIRA, inspired from the AMBER DRS installation scripts
#
# (c) 2010 F. Millour
#
# $Log: not supported by cvs2svn $
# $Log: installMira.sh,v $
# Revision 1.2 2010/07/27 14:45:29 fmillour
# Add yorickinstallation to the MIRA installation script
# + change to MIRA 0.9.10
#
# Latest versions of the different software needed
####################################################
yeti_URL=https://github.com/emmt/Yeti/archive
yeti_version=6.4.0
MIRA_version=1.1.1
MIRA_URL=https://github.com/emmt/MiRA/releases/download/release-${MIRA_version}
#OptimPack_URL=https://codeload.github.com/emmt/OptimPack/zip
#OptimPack_version=3.0.1
OptimPack_version=1.4.0
OptimPack_URL=https://github.com/emmt/OptimPackLegacy/releases/download/release-${OptimPack_version}

## TBD: last version of Mira is now 1.1.1 on github
## https://github.com/emmt/MiRA/archive/release-1.1.1.zip
####################################################
yorick_URL=http://github.com/dhmunro/yorick/archive
yorick_version=2_2_04
####################################################

####################################################
# Get kernel-name and hardware-platform
kernel=`uname -s`
if [ "$kernel" == "Darwin" ];
then
platform=`uname -p`
nbproc=`sysctl hw.ncpu | awk '{print $2}'`
else
platform=`uname -m`
nbproc=`nproc`
fi

echo -e "Installing MIRA on $kernel/$platform with $nbproc cores...\n"

# Get root directory
currDir=$PWD

################################################################################
# FIXME: here test all necessary software
hash make 2>/dev/null || { echo >&2 "I require make but it's not installed... Aborting. Try this on ubuntu: sudo apt-get install make"; exit 1; }
hash unzip 2>/dev/null || { echo >&2 "I require unzip but it's not installed... Aborting. Try this on ubuntu: sudo apt-get install unzip"; exit 1; }

# Set log file
logFile=$PWD/mira-install.log
rm -f $logFile
touch $logFile
if [ $? != 0 ]
then
echo "ERROR - could not access log file $logFile"
exit 1
fi

# Print usage
function printUsage () {
echo -e "Usage: `basename $0` [-h] [-y] [-C <dir>] [-F <dir>]";
echo -e "\t-h\tprint this help.";
exit 0;
}

# Parse command-line parameters
installOpts=""
while getopts "hyC:F:" option
do
case $option in
h ) # Help option
printUsage;
exit 0;;
y ) # Assume yes option
installOpts="$installOpts -$option";;
* ) # Unknown option
echo "Invalid option -- $option"
printUsage;
exit 1;;
esac
done

# test first if yorick is installed
echo -e "Checking for the yorick software..." ;
if test `which yorick`;
then
echo "write, Y_SITE; quit;" > /tmp/getY_site.i
INSTALL_DIR=`yorick -batch /tmp/getY_site.i`;
echo -e "yorick found! installation directory is ${INSTALL_DIR}" ;
else
echo -e "yorick not found! checking if INSTALL_DIR has been set..." ;
# Then test if the INSTALL_DIR directory is set by the user
if test ${INSTALL_DIR} ;
then
echo -e "Installation directory is ${INSTALL_DIR}" ;
# If INSTALL_DIR directory is set by the user but do not exist, create it
if test ! -d ${INSTALL_DIR} ;
then
echo " Creating ${INSTALL_DIR} ..."
mkdir ${INSTALL_DIR}
fi
# Download yorick
#cd ${INSTALL_DIR}
cd $currDir
echo -e "Downloading yorick, version $yorick_version at ${yorick_URL}/y_${yorick_version}.zip into ${PWD} ..."
wget -N ${yorick_URL}/y_${yorick_version}.zip >> $logFile 2>&1
if [ $? != 0 ]
then
echo -e "\nERROR - See log file '$logFile' for details."
exit 1;
fi
# Uncompress yorick
echo -e "Uncompressing the yorick package..."
unzip -o y_${yorick_version} >> $logFile 2>&1
if [ $? != 0 ]
then
echo -e "\nERROR - See log file '$logFile' for details."
exit 1;
fi
if [ $? != 0 ]
then
echo -e "\nERROR - See log file '$logFile' for details."
exit 1;
fi
# Compile yorick
echo -e "Configuring yorick..."
cd yorick-y_${yorick_version}
./configure >> $logFile 2>&1
if [ $? != 0 ]
then
echo -e "\nERROR - See log file '$logFile' for details."
exit 1;
fi
echo -e "Compiling yorick..."
make -j$nbproc relocatable >> $logFile 2>&1
if [ $? != 0 ]
then
echo -e "\nERROR - See log file '$logFile' for details."
exit 1;
fi
# Install yorick
echo -e "Installing yorick to ${INSTALL_DIR}..."
mv yorick-y_${yorick_version}-04.tgz ${INSTALL_DIR}
cd ${INSTALL_DIR}
tar xzf yorick-y_${yorick_version}-04.tgz
export PATH=${INSTALL_DIR}/yorick-y_${yorick_version}/bin:${PATH}
export LD_LIBRARY_PATH=${INSTALL_DIR}/yorick-${yorick_version}-04/lib:${LD_LIBRARY_PATH}
echo -e "Done!\n"

# test if yorick is installed
echo -e "Checking yorick installed well..." ;
if test `which yorick`;
then
echo "write, Y_SITE; quit;" > /tmp/getY_site.i
INSTALL_DIR=`yorick -batch /tmp/getY_site.i`;
echo -e "yorick found! installation directory is ${INSTALL_DIR}. Please consider adding this path to your PATH variable in your .bashrc or .profile file:\nexport PATH=${INSTALL_DIR}bin/:\$PATH" ;
echo "Press <enter> key when you have understood the above message..."
read touche
case $touche in
*) echo "Continuing..."
;;
esac
else
echo -e "ERROR - yorick not found!"
exit ;
fi

else
echo -e "ERROR - INSTALL_DIR variable, defining the installation directory, is not set !\nTry setting it with the following commands:\nbash shell:\nexport INSTALL_DIR=<your installation directory>\ntcsh shell:\nsetenv INSTALL_DIR <replace with your installation directory>"
exit ;
fi
fi

# Get kernel-name and hardware-platform
kernel=`uname -s`
if [ "$kernel" == "Darwin" ];
then
platform=`uname -p`
else
platform=`uname -m`
fi

echo -e "Installing the MIRA software on $kernel/$platform...\n"

####################################################
cd $currDir
echo -e "Downloading yeti, version $yeti_version at ${yeti_URL}/v${yeti_version}.zip into ${PWD} ..."
wget -N ${yeti_URL}/v${yeti_version}.zip >> $logFile 2>&1
if [ $? != 0 ]
then
echo -e "\nERROR - See log file '$logFile' for details."
exit 1;
fi

####################################################
echo -e "Uncompressing yeti..."
unzip -o v${yeti_version} >> $logFile 2>&1
if [ $? != 0 ]
then
echo -e "\nERROR - See log file '$logFile' for details."
exit 1;
fi

####################################################
echo -e "Installing yeti..."
cd Yeti-${yeti_version}
yorick -batch ./config.i --with-regex \
--with-fftw --with-fftw-defs="-I/usr/local/include" \
--with-fftw-libs="-L/usr/local/lib -lrfftw -lfftw" \
--with-gsl --with-gsl-defs="-I/usr/local/include" \
--with-gsl-libs="-L/usr/local/lib -lgsl -lgslcblas"
# Tiff library not always installed on target machines
# --with-tiff --with-tiff-libs="-ltiff" >> $logFile 2>&1
if [ $? != 0 ]
then
echo -e "\nERROR - See log file '$logFile' for details."
exit 1;
fi
make -j$nbproc clean >> $logFile 2>&1
if [ $? != 0 ]
then
echo -e "\nERROR - See log file '$logFile' for details."
exit 1;
fi
make -j$nbproc >> $logFile 2>&1
if [ $? != 0 ]
then
echo -e "\nERROR - See log file '$logFile' for details."
exit 1;
fi
make -j$nbproc install >> $logFile 2>&1
if [ $? != 0 ]
then
echo -e "\nERROR - See log file '$logFile' for details."
exit 1;
fi
echo -e "\nDone..."
cd ..

####################################################
cd $currDir
echo -e "Downloading OptimPack, version $OptimPack_version at ${OptimPack_URL}/OptimPackLegacy-${OptimPack_version}.tar.bz2 into ${PWD} ..."
wget -N ${OptimPack_URL}/OptimPackLegacy-${OptimPack_version}.tar.bz2 >> $logFile 2>&1
if [ $? != 0 ]
then
echo -e "\nERROR - See log file '$logFile' for details."
exit 1;
fi

####################################################
echo -e "Uncompressing OptimPack..."
tar jxvf OptimPackLegacy-${OptimPack_version}.tar.bz2 >> $logFile 2>&1
if [ $? != 0 ]
then
echo -e "\nERROR - See log file '$logFile' for details."
exit 1;
fi

####################################################
echo -e "Installing OptimPack..."
cd OptimPackLegacy-${OptimPack_version}/yorick
yorick -batch make.i >> $logFile 2>&1
if [ $? != 0 ]
then
echo -e "\nERROR - See log file '$logFile' for details."
exit 1;
fi
make -j$nbproc >> $logFile 2>&1
if [ $? != 0 ]
then
echo -e "\nERROR - See log file '$logFile' for details."
exit 1;
fi
make -j$nbproc install >> $logFile 2>&1
if [ $? != 0 ]
then
echo -e "\nERROR - See log file '$logFile' for details."
exit 1;
fi
cd ../..
echo -e "Done!\n"

####################################################
cd $currDir
echo -e "Downloading MIRA, version $MIRA_version at ${MIRA_URL}/mira-${MIRA_version}.tar.bz2 into ${PWD}..."
wget -N ${MIRA_URL}/mira-${MIRA_version}.tar.bz2 >> $logFile 2>&1
if [ $? != 0 ]
then
echo -e "\nERROR - See log file '$logFile' for details."
exit 1;
fi

####################################################
echo -e "Uncompressing MIRA..."
echo $PWD
tar jxvf mira-${MIRA_version}.tar.bz2 >> $logFile 2>&1
cd mira-${MIRA_version}/src
echo "734c734
< good = ((amperr > 0.0)&(phierr > 0.0));
---
> good = ((amperr >= 0.0)&(phierr > 0.0)&(amperr < 0.1)&(phierr < 60));
770c770
< good = (vis2err > 0.0);
---
> good = ((vis2err > 0.0)&(vis2data / vis2err > 1.));
800c800
< good = ((amperr > 0.0)&(phierr > 0.0));
---
> good = ((amperr >= 0.0)&(phierr > 0.0)&(amperr < 0.1)&(phierr < 60));
2557a2558
> extern extra
" > mira.patch
patch -i mira.patch mira.i
cd ..
./configure
make install
echo -e "Moving MIRA files into yorick directory..."
mv -f -v src/*.i ${INSTALL_DIR}/i
echo -e "Done!\n"