I made a small script to install the MIRA software. It checks if yorick is installed, also optimpack and downloads them and installs them if they are missing.
You can downlad it here
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 | #! /bin/bash #****************************************************************************** # Install script for MIRA, inspired from the AMBER DRS installation scripts # # (c) 2010 F. Millour # # $Log: not supported by cvs2svn $ # $Log: installMira.sh,v $ # Revision 1.2 2010/07/27 14:45:29 fmillour # Add yorickinstallation to the MIRA installation script # + change to MIRA 0.9.10 # # Latest versions of the different software needed #################################################### yeti_URL=https://github.com/emmt/Yeti/archive yeti_version=6.4.0 MIRA_version=1.1.1 MIRA_URL=https://github.com/emmt/MiRA/releases/download/release-${MIRA_version} #OptimPack_URL=https://codeload.github.com/emmt/OptimPack/zip #OptimPack_version=3.0.1 OptimPack_version=1.4.0 OptimPack_URL=https://github.com/emmt/OptimPackLegacy/releases/download/release-${OptimPack_version} ## TBD: last version of Mira is now 1.1.1 on github ## https://github.com/emmt/MiRA/archive/release-1.1.1.zip #################################################### yorick_URL=http://github.com/dhmunro/yorick/archive yorick_version=2_2_04 #################################################### #################################################### # Get kernel-name and hardware-platform kernel=`uname -s` if [ "$kernel" == "Darwin" ]; then platform=`uname -p` nbproc=`sysctl hw.ncpu | awk '{print $2}'` else platform=`uname -m` nbproc=`nproc` fi echo -e "Installing MIRA on $kernel/$platform with $nbproc cores...\n" # Get root directory currDir=$PWD ################################################################################ # FIXME: here test all necessary software hash make 2>/dev/null || { echo >&2 "I require make but it's not installed... Aborting. Try this on ubuntu: sudo apt-get install make"; exit 1; } hash unzip 2>/dev/null || { echo >&2 "I require unzip but it's not installed... Aborting. Try this on ubuntu: sudo apt-get install unzip"; exit 1; } # Set log file logFile=$PWD/mira-install.log rm -f $logFile touch $logFile if [ $? != 0 ] then echo "ERROR - could not access log file $logFile" exit 1 fi # Print usage function printUsage () { echo -e "Usage: `basename $0` [-h] [-y] [-C <dir>] [-F <dir>]"; echo -e "\t-h\tprint this help."; exit 0; } # Parse command-line parameters installOpts="" while getopts "hyC:F:" option do case $option in h ) # Help option printUsage; exit 0;; y ) # Assume yes option installOpts="$installOpts -$option";; * ) # Unknown option echo "Invalid option -- $option" printUsage; exit 1;; esac done # test first if yorick is installed echo -e "Checking for the yorick software..." ; if test `which yorick`; then echo "write, Y_SITE; quit;" > /tmp/getY_site.i INSTALL_DIR=`yorick -batch /tmp/getY_site.i`; echo -e "yorick found! installation directory is ${INSTALL_DIR}" ; else echo -e "yorick not found! checking if INSTALL_DIR has been set..." ; # Then test if the INSTALL_DIR directory is set by the user if test ${INSTALL_DIR} ; then echo -e "Installation directory is ${INSTALL_DIR}" ; # If INSTALL_DIR directory is set by the user but do not exist, create it if test ! -d ${INSTALL_DIR} ; then echo " Creating ${INSTALL_DIR} ..." mkdir ${INSTALL_DIR} fi # Download yorick #cd ${INSTALL_DIR} cd $currDir echo -e "Downloading yorick, version $yorick_version at ${yorick_URL}/y_${yorick_version}.zip into ${PWD} ..." wget -N ${yorick_URL}/y_${yorick_version}.zip >> $logFile 2>&1 if [ $? != 0 ] then echo -e "\nERROR - See log file '$logFile' for details." exit 1; fi # Uncompress yorick echo -e "Uncompressing the yorick package..." unzip -o y_${yorick_version} >> $logFile 2>&1 if [ $? != 0 ] then echo -e "\nERROR - See log file '$logFile' for details." exit 1; fi if [ $? != 0 ] then echo -e "\nERROR - See log file '$logFile' for details." exit 1; fi # Compile yorick echo -e "Configuring yorick..." cd yorick-y_${yorick_version} ./configure >> $logFile 2>&1 if [ $? != 0 ] then echo -e "\nERROR - See log file '$logFile' for details." exit 1; fi echo -e "Compiling yorick..." make -j$nbproc relocatable >> $logFile 2>&1 if [ $? != 0 ] then echo -e "\nERROR - See log file '$logFile' for details." exit 1; fi # Install yorick echo -e "Installing yorick to ${INSTALL_DIR}..." mv yorick-y_${yorick_version}-04.tgz ${INSTALL_DIR} cd ${INSTALL_DIR} tar xzf yorick-y_${yorick_version}-04.tgz export PATH=${INSTALL_DIR}/yorick-y_${yorick_version}/bin:${PATH} export LD_LIBRARY_PATH=${INSTALL_DIR}/yorick-${yorick_version}-04/lib:${LD_LIBRARY_PATH} echo -e "Done!\n" # test if yorick is installed echo -e "Checking yorick installed well..." ; if test `which yorick`; then echo "write, Y_SITE; quit;" > /tmp/getY_site.i INSTALL_DIR=`yorick -batch /tmp/getY_site.i`; echo -e "yorick found! installation directory is ${INSTALL_DIR}. Please consider adding this path to your PATH variable in your .bashrc or .profile file:\nexport PATH=${INSTALL_DIR}bin/:\$PATH" ; echo "Press <enter> key when you have understood the above message..." read touche case $touche in *) echo "Continuing..." ;; esac else echo -e "ERROR - yorick not found!" exit ; fi else echo -e "ERROR - INSTALL_DIR variable, defining the installation directory, is not set !\nTry setting it with the following commands:\nbash shell:\nexport INSTALL_DIR=<your installation directory>\ntcsh shell:\nsetenv INSTALL_DIR <replace with your installation directory>" exit ; fi fi # Get kernel-name and hardware-platform kernel=`uname -s` if [ "$kernel" == "Darwin" ]; then platform=`uname -p` else platform=`uname -m` fi echo -e "Installing the MIRA software on $kernel/$platform...\n" #################################################### cd $currDir echo -e "Downloading yeti, version $yeti_version at ${yeti_URL}/v${yeti_version}.zip into ${PWD} ..." wget -N ${yeti_URL}/v${yeti_version}.zip >> $logFile 2>&1 if [ $? != 0 ] then echo -e "\nERROR - See log file '$logFile' for details." exit 1; fi #################################################### echo -e "Uncompressing yeti..." unzip -o v${yeti_version} >> $logFile 2>&1 if [ $? != 0 ] then echo -e "\nERROR - See log file '$logFile' for details." exit 1; fi #################################################### echo -e "Installing yeti..." cd Yeti-${yeti_version} yorick -batch ./config.i --with-regex \ --with-fftw --with-fftw-defs="-I/usr/local/include" \ --with-fftw-libs="-L/usr/local/lib -lrfftw -lfftw" \ --with-gsl --with-gsl-defs="-I/usr/local/include" \ --with-gsl-libs="-L/usr/local/lib -lgsl -lgslcblas" # Tiff library not always installed on target machines # --with-tiff --with-tiff-libs="-ltiff" >> $logFile 2>&1 if [ $? != 0 ] then echo -e "\nERROR - See log file '$logFile' for details." exit 1; fi make -j$nbproc clean >> $logFile 2>&1 if [ $? != 0 ] then echo -e "\nERROR - See log file '$logFile' for details." exit 1; fi make -j$nbproc >> $logFile 2>&1 if [ $? != 0 ] then echo -e "\nERROR - See log file '$logFile' for details." exit 1; fi make -j$nbproc install >> $logFile 2>&1 if [ $? != 0 ] then echo -e "\nERROR - See log file '$logFile' for details." exit 1; fi echo -e "\nDone..." cd .. #################################################### cd $currDir echo -e "Downloading OptimPack, version $OptimPack_version at ${OptimPack_URL}/OptimPackLegacy-${OptimPack_version}.tar.bz2 into ${PWD} ..." wget -N ${OptimPack_URL}/OptimPackLegacy-${OptimPack_version}.tar.bz2 >> $logFile 2>&1 if [ $? != 0 ] then echo -e "\nERROR - See log file '$logFile' for details." exit 1; fi #################################################### echo -e "Uncompressing OptimPack..." tar jxvf OptimPackLegacy-${OptimPack_version}.tar.bz2 >> $logFile 2>&1 if [ $? != 0 ] then echo -e "\nERROR - See log file '$logFile' for details." exit 1; fi #################################################### echo -e "Installing OptimPack..." cd OptimPackLegacy-${OptimPack_version}/yorick yorick -batch make.i >> $logFile 2>&1 if [ $? != 0 ] then echo -e "\nERROR - See log file '$logFile' for details." exit 1; fi make -j$nbproc >> $logFile 2>&1 if [ $? != 0 ] then echo -e "\nERROR - See log file '$logFile' for details." exit 1; fi make -j$nbproc install >> $logFile 2>&1 if [ $? != 0 ] then echo -e "\nERROR - See log file '$logFile' for details." exit 1; fi cd ../.. echo -e "Done!\n" #################################################### cd $currDir echo -e "Downloading MIRA, version $MIRA_version at ${MIRA_URL}/mira-${MIRA_version}.tar.bz2 into ${PWD}..." wget -N ${MIRA_URL}/mira-${MIRA_version}.tar.bz2 >> $logFile 2>&1 if [ $? != 0 ] then echo -e "\nERROR - See log file '$logFile' for details." exit 1; fi #################################################### echo -e "Uncompressing MIRA..." echo $PWD tar jxvf mira-${MIRA_version}.tar.bz2 >> $logFile 2>&1 cd mira-${MIRA_version}/src echo "734c734 < good = ((amperr > 0.0)&(phierr > 0.0)); --- > good = ((amperr >= 0.0)&(phierr > 0.0)&(amperr < 0.1)&(phierr < 60)); 770c770 < good = (vis2err > 0.0); --- > good = ((vis2err > 0.0)&(vis2data / vis2err > 1.)); 800c800 < good = ((amperr > 0.0)&(phierr > 0.0)); --- > good = ((amperr >= 0.0)&(phierr > 0.0)&(amperr < 0.1)&(phierr < 60)); 2557a2558 > extern extra " > mira.patch patch -i mira.patch mira.i cd .. ./configure make install echo -e "Moving MIRA files into yorick directory..." mv -f -v src/*.i ${INSTALL_DIR}/i echo -e "Done!\n" |